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Guide
API Reference
Changelog
GitHub
CLI & lamindb
CLI
lamindb
lamindb.track
lamindb.finish
lamindb.tracked
lamindb.Artifact
lamindb.Storage
lamindb.Transform
lamindb.Run
lamindb.Record
lamindb.Feature
lamindb.Schema
lamindb.User
lamindb.Collection
lamindb.Project
lamindb.Space
lamindb.Branch
lamindb.Reference
lamindb.connect
lamindb.view
lamindb.save
lamindb.UPath
lamindb.settings
lamindb.context
lamindb.curators
lamindb.curators.DataFrameCurator
lamindb.curators.AnnDataCurator
lamindb.curators.MuDataCurator
lamindb.curators.SpatialDataCurator
lamindb.curators.TiledbsomaExperimentCurator
lamindb.curators.core
lamindb.curators.core.Curator
lamindb.curators.core.SlotsCurator
lamindb.curators.core.ComponentCurator
lamindb.curators.core.CatVector
lamindb.curators.core.CatLookup
lamindb.curators.core.DataFrameCatManager
lamindb.integrations
lamindb.integrations.save_vitessce_config
lamindb.integrations.save_tiledbsoma_experiment
lamindb.integrations.curate_from_croissant
lamindb.integrations.lightning
lamindb.integrations.lightning.Callback
lamindb.examples
lamindb.examples.schemas
lamindb.examples.schemas.valid_features
lamindb.examples.schemas.anndata_ensembl_gene_ids_and_valid_features_in_obs
lamindb.examples.datasets
lamindb.examples.datasets.mini_immuno
lamindb.examples.datasets.anndata_with_obs
lamindb.examples.datasets.file_fcs
lamindb.examples.datasets.file_fcs_alpert19
lamindb.examples.datasets.file_tsv_rnaseq_nfcore_salmon_merged_gene_counts
lamindb.examples.datasets.file_jpg_paradisi05
lamindb.examples.datasets.file_tiff_suo22
lamindb.examples.datasets.file_fastq
lamindb.examples.datasets.file_bam
lamindb.examples.datasets.file_mini_csv
lamindb.examples.datasets.dir_scrnaseq_cellranger
lamindb.examples.datasets.dir_iris_images
lamindb.examples.datasets.dict_cellxgene_uns
lamindb.examples.datasets.df_iris
lamindb.examples.datasets.df_iris_in_meter
lamindb.examples.datasets.df_iris_in_meter_study1
lamindb.examples.datasets.df_iris_in_meter_study2
lamindb.examples.datasets.anndata_mouse_sc_lymph_node
lamindb.examples.datasets.anndata_human_immune_cells
lamindb.examples.datasets.anndata_pbmc68k_reduced
lamindb.examples.datasets.anndata_file_pbmc68k_test
lamindb.examples.datasets.anndata_pbmc3k_processed
lamindb.examples.datasets.anndata_with_obs
lamindb.examples.datasets.anndata_suo22_Visium10X
lamindb.examples.datasets.mudata_papalexi21_subset
lamindb.examples.datasets.schmidt22_crispra_gws_IFNG
lamindb.examples.datasets.schmidt22_perturbseq
lamindb.examples.datasets.spatialdata_blobs
lamindb.examples.datasets.fake_bio_notebook_titles
lamindb.examples.cellxgene
lamindb.examples.cellxgene.save_cellxgene_defaults
lamindb.examples.cellxgene.create_cellxgene_schema
lamindb.examples.croissant
lamindb.examples.croissant.mini_immuno
lamindb.examples.mlflow
lamindb.examples.mlflow.save_mlflow_features
lamindb.examples.wandb
lamindb.examples.wandb.save_wandb_features
lamindb.errors
lamindb.setup
lamindb.setup.login
lamindb.setup.logout
lamindb.setup.init
lamindb.setup.disconnect
lamindb.setup.delete
lamindb.setup.migrate
lamindb.setup.settings
lamindb.setup.core
lamindb.setup.core.SetupSettings
lamindb.setup.core.UserSettings
lamindb.setup.core.InstanceSettings
lamindb.setup.core.StorageSettings
lamindb.setup.django
lamindb.setup.errors
lamindb.setup.errors.CurrentInstanceNotConfigured
lamindb.setup.errors.InstanceNotSetupError
lamindb.setup.errors.ModuleWasntConfigured
lamindb.setup.errors.StorageAlreadyManaged
lamindb.setup.errors.StorageNotEmpty
lamindb.setup.errors.InstanceLockedException
lamindb.setup.errors.SettingsEnvFileOutdated
lamindb.setup.errors.CannotSwitchDefaultInstance
lamindb.setup.types
lamindb.setup.types.UPathStr
lamindb.setup.types.StorageType
lamindb.base
lamindb.base.uids
lamindb.base.uids.base26
lamindb.base.uids.base62
lamindb.base.uids.base64
lamindb.base.uids.base62_8
lamindb.base.uids.base62_12
lamindb.base.uids.base62_16
lamindb.base.uids.base62_20
lamindb.base.types
lamindb.base.types.ArtifactKind
lamindb.base.types.TransformType
lamindb.base.types.Dtype
lamindb.base.types.UPathStr
lamindb.base.types.StrField
lamindb.base.types.ListLike
lamindb.base.types.FieldAttr
lamindb.base.fields
lamindb.base.fields.CharField
lamindb.base.fields.TextField
lamindb.base.fields.ForeignKey
lamindb.base.fields.BooleanField
lamindb.base.fields.DateField
lamindb.base.fields.DateTimeField
lamindb.base.fields.BigIntegerField
lamindb.base.fields.IntegerField
lamindb.base.fields.OneToOneField
lamindb.base.fields.FloatField
lamindb.base.fields.DecimalField
lamindb.base.fields.BinaryField
lamindb.base.fields.JSONField
lamindb.base.fields.EmailField
lamindb.base.fields.TimeField
lamindb.base.fields.SlugField
lamindb.base.fields.URLField
lamindb.base.fields.UUIDField
lamindb.base.fields.PositiveIntegerField
lamindb.base.fields.PositiveSmallIntegerField
lamindb.base.fields.SmallIntegerField
lamindb.base.fields.GenericIPAddressField
lamindb.base.fields.DurationField
lamindb.base.fields.CharField
lamindb.base.fields.TextField
lamindb.base.dtypes
lamindb.base.doc_args
lamindb.base.deprecated
lamindb.core
lamindb.core.Settings
lamindb.core.subsettings
lamindb.core.subsettings.CreationSettings
lamindb.core.subsettings.AnnotationSettings
lamindb.core.Context
lamindb.core.loaders
lamindb.core.loaders.SUPPORTED_SUFFIXES
lamindb.core.loaders.load_fcs
lamindb.core.loaders.load_tsv
lamindb.core.loaders.load_h5ad
lamindb.core.loaders.load_h5mu
lamindb.core.loaders.load_html
lamindb.core.loaders.load_json
lamindb.core.loaders.load_image
lamindb.core.loaders.load_svg
lamindb.core.MappedCollection
lamindb.core.storage
lamindb.core.storage.VALID_SUFFIXES
lamindb.core.storage.AnnDataAccessor
lamindb.core.storage.SpatialDataAccessor
lamindb.core.storage.BackedAccessor
lamindb.core.logger
lamindb.models
lamindb.models.BaseSQLRecord
lamindb.models.SQLRecord
lamindb.models.Registry
lamindb.models.BasicQuerySet
lamindb.models.QuerySet
lamindb.models.ArtifactSet
lamindb.models.LazyArtifact
lamindb.models.QueryManager
lamindb.models.SQLRecordList
lamindb.models.FeatureManager
lamindb.models.LabelManager
lamindb.models.IsVersioned
lamindb.models.CanCurate
lamindb.models.HasParents
lamindb.models.TracksRun
lamindb.models.TracksUpdates
lamindb.models.FeatureValue
lamindb.models.InspectResult
lamindb.models.ValidateFields
lamindb.models.SchemaOptionals
lamindb.ULabel
Modules
bionty
bionty.Organism
bionty.Gene
bionty.Protein
bionty.CellMarker
bionty.CellType
bionty.CellLine
bionty.Tissue
bionty.Disease
bionty.Pathway
bionty.Phenotype
bionty.ExperimentalFactor
bionty.DevelopmentalStage
bionty.Ethnicity
bionty.settings
bionty.Source
bionty.core
bionty.core.BioRecord
bionty.core.StaticReference
bionty.core.Settings
bionty.core.sync_public_sources
bionty.base
bionty.base.Organism
bionty.base.Gene
bionty.base.Protein
bionty.base.CellMarker
bionty.base.CellType
bionty.base.CellLine
bionty.base.Tissue
bionty.base.Disease
bionty.base.Phenotype
bionty.base.Pathway
bionty.base.ExperimentalFactor
bionty.base.DevelopmentalStage
bionty.base.Drug
bionty.base.Ethnicity
bionty.base.BFXPipeline
bionty.base.BioSample
bionty.base.PublicOntology
bionty.base.PublicOntologyField
bionty.base.display_sources
bionty.base.display_currently_used_sources
bionty.base.settings
bionty.uids
bionty.uids.gene
bionty.uids.protein
bionty.uids.cellmarker
bionty.uids.ontology
bionty.uids.source
wetlab
wetlab.Experiment
wetlab.Biosample
wetlab.Techsample
wetlab.Donor
wetlab.GeneticPerturbation
wetlab.Biologic
wetlab.Compound
wetlab.CompoundPerturbation
wetlab.EnvironmentalPerturbation
wetlab.CombinationPerturbation
wetlab.Well
wetlab.PerturbationTarget
wetlab.GeneticPerturbationSystem
wetlab.BiologicType
API Reference
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Vitessce integration
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